A phylogenetic study of some representatives of the genus Pentaschistis
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Holder, Francisca
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University of the Free State
Abstract
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English: The genus Pentaschistis (Nees) Spach consists of 68 species and is endemic to
Africa, with 57 species being indigenous to South Africa and 40 species endemic (Gibbs
RusseIl et al. 1990).
To date, the chromosome number of 30 species have been reported, as well as the
sequences of the rpoC2 gene of two species and the ITS region of one species.
In this study, seventeen specimens were cytogenetically examined. The polyploid
levels ranged from diploid (n = x = 7) to 14-ploid (n = 7x = 49). Two species were
examined for the first time, namely: P. capensis (diploid) and P. veneta (tetraploid). New
polyploid levels were also observed for P. viscidula (tetraploidy), P. densifolia
(octaploidy), P. rupestris (decaploidy & 14-ploidy) and P. tortuosa (octaploidy).
Due to the fact that no, or very few, multivalents were observed, we concluded
that the species are alloploids or segmental alloploids tending towards alloploidy. The
morphological groupings (Linder & Ellis 1990a) could unfortunately neither be supported
nor rejected by cytogenetic evidence alone, therefore cytogenetics was used in
conjunction with molecular data to determine the phylogeny.
The fragment patterns obtained from RAPDs were used to calculate the genetic
distances. A high degree of variation was observed within and between the morphological
groups. Cladograms were obtained with the computer programs PAUP and Hennig86,
and PAUP gave the most parsimonious cladogram. The resolutions of these cladograms
were, however, not good, therefore DAFs was performed.
Again PAUP and Hennig86 were used and again PAUP proved to give the most
parsimonious clado gram. These cladograms gave a clearer indication of the phylogeny of
Pentaschistis, but the genetic distances within and between the species again proved to be
high.
The ITS} region was sequenced and aligned separately with Clustal W and Malign.
These cladograms indicated a close alliance between P. eriostoma and P. curvifolia.
The three data sets were combined and a cladogram with much better resolution
was obtained. The morphological data was included and had a minor influence on the
phylogeny. This cladogram also indicated a sister relationship between P. eriostoma and
P. curvifolia.
Current data suggest that P. eriostoma could well have developed through the
hybridisation of P. curvifolia and that both P. eriostoma are correctly grouped with
Pentaschistis. The combined analysis also indicate that the morphological groupings of
Linder & Ellis (1990a) is somewhat supported by phylogeny.
Description
Keywords
Arundineae, Arundinoideae, Cytogenetics, DNA amplification fingerprinting (DAFs), Pentaschistis, Poaceae, Polyploidy, Internal transcribed spaeers (lTS), Random amplified polymorphic DNA (RAPDs), Sequencing, Pentaschistis -- Phylogeny, Grasses -- Phylogeny, Dissertation (M.Sc. (Botany and Genetics))--University of the Free State, 1999